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BASE: a practical de novo assembler for large genomes using long NGS reads
By Rahul Nayak 2228 days agogithub.com - new de novo assembler called BASE. It enhances the classic seed-extension approach by indexing the reads efficiently to generate adaptive seeds that have high probability to appear uniquely in the genome. Such seeds form the basis for BASE...CANU genome assembly parameters !
By Rahul Nayak 2148 days agoChoose the appropriate parameters to run Canu and run it.Professor/Associate Professor/ Assistant Professor at Chettinad Academy of Research and Education
OPEN FACULTY POSITION Chettinad Academy of Research and Education (CARE) invites applications from eligible and translational research-oriented candidates to the posts of Professor/Associate Professor/ Assistant Professor Computational Biology,...Simka and SimkaMin are comparative metagenomics method dedicated to NGS datasets
By Neel 1968 days agogithub.com - Simka is a de novo comparative metagenomics tool. Simka represents each dataset as a k-mer spectrum and compute several classical ecological distances between them. Developper: Gaëtan Benoit, PhD, former member of...The Minerva Research Group for Bioinformatics
The focus of the bioinformatics group is to use computational approaches to gain an insight into genome evolution in primates. http://www.eva.mpg.de/genetics/bioinformatics/overview.html?Fsize=0%2C%20%40%2F%27 Kelso Group Department of...gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
By Rahul Nayak 1766 days agogithub.com - gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. They compare the performance of gapFinisher against two other published gap filling tools PBJelly and...
Monitor running jobs on Linux server
Last updated 3824 days ago by Jitendra NarayanYou as a bioinformatican run lots of program on your servers. Sometime the shared server is also used by your colleague. If server is busy you sometime need to check the running programs and want to monitor the running programs as well. The "top"...Parliament2: Runs a combination of tools to generate structural variant calls on whole-genome...
By Jit 1641 days agogithub.com - Parliament2 identifies structural variants in a given sample relative to a reference genome. These structural variants cover large deletion events that are called as Deletions of a region, Insertions of a sequence into a region, Duplications of a...Project Associate-I | Project Associate-II | Senior Project Associate @ IGIB
Experience in Next Generation Sequencing (NGS) application and interest in Genomics/ Clinical / Translational Applications. OR Good computational programming skills and deep interest in working on interface of Genomics and Clinical application....Assistant Professor in Bioinformatics at Dr. D. Y. Patil Biotechnology & Bioinformatics...
Dr. D. Y. Patil Biotechnology & Bioinformatics Institute Tathawade, Pune 411033. Assistant Professor in Bioinformatics Essential : First Class Master’s Degree in the appropriate branch of Life Sciences / Technology (Tech.) OR Ph.D...
