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modelStudio: a package automates the explanation of machine learning predictive models
By Jit 1766 days agomodeloriented.github.io - The modelStudio package automates the explanation of machine learning predictive models. This package generates advanced interactive and animated model explanations in the form of a serverless HTML site. It...PheWAS: R package is designed to provide an accessible interface to the phenome wide association...
By BioStar 1576 days agogithub.com - The PheWAS R package is designed to provide an accessible interface to the phenome wide association study. For a description of the methods available and some simple examples, please see the package vignette or the R documentation. For...Luigi: a Python package that helps you build complex pipelines of batch jobs.
By Neel 1248 days agogithub.com - Luigi is a Python (3.6, 3.7, 3.8, 3.9 tested) package that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization, handling failures, command line integration, and much more. Run pip...Genomic approaches to study global regulation of gene expression in the mouse immune system
This group seeks to elucidate the principles of protein structure evolution, higher order protein structure and protein folding, and the principles underlying protein complex formation and organization. We have a longstanding interest in...Download mutliple fasta file from NCBI in one GO!!
By Rahul Agarwal 4112 days agoedwards.sdsu.edu - if you have less time, then use three ways mentioned in bookmark link to extract/download all fasta sequences in single click given that you already have a list of GIs or accession IDs . Alternatively, use one liner perl script: perl -ne...ncbi-datasets-cli -- Quickstart: command line tools !
By Jit 1082 days ago Comments (1)www.ncbi.nlm.nih.gov - Install and use the NCBI Datasets command line tools The NCBI Datasets datasets command line tools are datasets and dataformat . Use datasets to download biological sequence data across all domains of life from...Release Notes for Genome Workbench 2.10.5
By Jit 3117 days agoNew Features in latest release New ProSplign tool integrated with Genome WorkbenchEntrez Direct: E-utilities on the UNIX Command Line
By Anjana 2957 days agowww.ncbi.nlm.nih.gov - Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line...Eugene V. Koonin Lab
Interested in understanding the evolution of life. To obtain glimpses of such understanding, we employ existing and new methods of computational biology to perform research in several major...
