Surabhi Chaudhary
A Bioinformatician
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Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
By Jit 2558 days agosourceforge.net - Modern genome sequencing strategies are highly sensitive to contamination making the detection of foreign DNA sequences an important part of analysis pipelines. Here we use Taxoblast, a simple pipeline with a graphical user interface, for the...EuGI: a novel resource for studying genomic islands to facilitate horizontal gene transfer...
By Surabhi Chaudhary 2388 days agobmcgenomics.biomedcentral.com - SWGIS v2.0 along with the EuGI database, which houses GIs identified in 66 different eukaryotic species, and the EuGI web-resource, provide the first comprehensive resource for studying HGT in...minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences
By Jit 2349 days agogithub.com - git clone https://github.com/lh3/minimap2 cd minimap2 && make # long sequences against a reference genome ./minimap2 -a test/MT-human.fa test/MT-orang.fa > test.sam # create an index first and then map ./minimap2 -d MT-human.mmi...UPhO: Scripts for homology and orthology assessment from genomic sequences.
By BioStar 2141 days agogithub.com - UPhO finds orthologs with and without inparalogs from input gene family trees. Refer to the Documentation.pdf for more detailed explanations on its usage, installation and dependencies. Type UPhO.py -h for help. The only input requierement for UPhO...Sequence Tube Maps: displays multiple genomic sequences in the form of a tube map
By Jit 1719 days agogithub.com - A JavaScript module for the visualization of genomic sequence graphs. It automatically generates a "tube map"-like visualization of sequence graphs which have been created with vg. (https://github.com/vgteam/vg) Link to working demo:...
Genome Browsers
Last updated 4118 days ago by Rahul Agarwal Comments (2)Genome Browser is the platform/database used for searching and retreiving sequences and annotation of genomes belong to various eukaryotes, prokaryotes, etc. Following are the weblink for different available...Largest Genome Sequenced
By Rahul Agarwal 3901 days agowww.news.ucdavis.edu - The enormous size of the loblolly pine genome having 22 billion base pairs compared to only 3 billion in the human genome. In other words, it is seven times larger than a human’s and also the largest and the most...CSIR Nehru Science Postdoctoral Research Fellowship
CSIR Nehru Science Postdoctoral Research Fellowship About Fellowship: CSIR Nehru Science Postdoctoral Research Fellowship Scheme is an Research Fellowship awarded/given by HRD Ministry, Govt. of India every year to more than 100 fellows. It...Science-Corps Fellows, to teach science to underserved students and build science capacity in the...
*Science-Corps* *Providing an opportunity for recent PhD graduates, as Science-Corps Fellows, to teach science to underserved students and build science capacity in the developing world* Interested in taking a six month break from the...Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
By Rahul Nayak 2568 days agogithub.com - Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good...
