sourceforge.net - Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA file.
Grinder can produce genomic, metagenomic, transcriptomic, metatranscriptomic,...
http://genometools.org/ - The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. It is based on a C library named...
https://virtual-flow.org/ - related tasks on Linux-based computer clusters of any type and size which are managed by a batchsystem (such as SLURM).
Currently, there exist two versions of VirtualFlow, which are tailored to different types of tasks:
VFLP:...