Neel
Bioinformatics Beginner
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By Jit 3077 days agogithub.com - Heap, that enables robustly sensitive and accurate calling of SNPs, particularly with a low coverage NGS data, which must be aligned to the reference genome sequences in advance. To reduce false positive SNPs, Heap determines genotypes and calls...MSAProbs - Parallel and accurate multiple sequence alignment
By Neel 2631 days agomsaprobs.sourceforge.net - MSAProbs is a well-established state-of-the-art multiple sequence alignment algorithm for protein sequences. The design of MSAProbs is based on a combination of pair hidden Markov models and partition functions to calculate posterior...Liftoff: An accurate GFF3/GTF lift over pipeline
By Neel 2102 days agogithub.com - Liftoff is a tool that accurately maps annotations in GFF or GTF between assemblies of the same, or closely-related species. Unlike current coordinate lift-over tools which require a pre-generated “chain” file as input, Liftoff is a...OrthoGNC: A Software for Accurate Identification of Orthologs Based on Gene Neighborhood...
By Jit 3233 days agowww.sciencedirect.com - Orthology relations can be used to transfer annotations from one gene (or protein) to another. Hence, detecting orthology relations has become an important task in the post-genomic era. Various genomic events, such as duplication and horizontal gene...Cleaner BLAST Databases for More Accurate Results
By LEGE 882 days agoRemoving contaminated sequences using NCBI quality assurance toolslordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data
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By Jit 2472 days agoacademic.oup.com - The Docker image is available at https://hub.docker.com/r/biodatageeks/. Supplementary information on benchmarking procedure as well as test data are publicly accessible at the project documentation...
