Rahul Agarwal
I'm a Bioinformatician and Programmer
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Scientist Bioinformatics Positions
Bioinformatics-Multi_Omics_Integration https://www.researchgate.net/job/939073_Senior_Scientist_Bioinformatics-Multi_Omics_Integration Senior_Scientist_Bioinformatics-Transcriptomics_Analysis...FiNGS: Filters for Next Generation Sequencing
By Neel 1367 days agogithub.com - Key features Filters SNVs from any variant caller to remove false positives Calculates metrics based on BAM files and provides filtering not possible with other tools Fully user-configurable filtering (including which filters to use and their...Illuminating next generation sequencing data with Go
By Rahul Agarwal 4112 days agotalks.biogo.googlecode.com - Another good lecture for Illumina sequencing data analysis from Dan Kortschak, Bioinformatics Group, School of Molecular and Biomedical Science ,The University of AdelaideCelebrating Crystallography - An animated adventure
By Jitendra Narayan 3677 days agoNEW: Now with French or Spanish subtitles (click on the 'Captions' icon to select). Plus... Watch the French language version here: https://www.youtube.com/watch?v=PvLu7BOsJhM X-ray crystallography is arguably one of the greatest innovations of the...Role of microbes in forensic science
By Rahul Agarwal 4075 days ago‘Microbial clock’ determine time of deathYour stress/depression came from ancestor
By Rahul Agarwal 3857 days agoStress drives changes in the sperm microRNA which carry forward to later generations
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
Last updated 2575 days ago by Abhimanyu Singh Comments (1)kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid determination of read compatibility with targets) Software (C++) https://pachterlab.github.io/kallisto/ Sailfish Estimation of isoform abundances...AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing
By BioStar 2530 days agosourceforge.net - AIRVF that works on flowgram, raw and mapped reads and called variants to reduce artifact-driven false variant calls. Tests on sequencing data of standard reference material showed up to ∼98% reduction of false variants when combined to...Heap: a highly sensitive and accurate SNP detection tool for low-coverage high-throughput...
By Jit 2412 days agogithub.com - Heap, that enables robustly sensitive and accurate calling of SNPs, particularly with a low coverage NGS data, which must be aligned to the reference genome sequences in advance. To reduce false positive SNPs, Heap determines genotypes and calls...MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
By Rahul Nayak 2390 days agogithub.com - MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single molecula sequencing (SMRT) reads. MECAT employs novel alignment and error correction algorithms that are much more efficient than the state of art of aligners and...
