Rahul Agarwal
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INC-Seq: accurate single molecule reads using nanopore sequencing
By Jit 3120 days agogithub.com - INC-Seq reads enabled accurate species-level classification, identification of species at 0.1 % abundance and robust quantification of relative abundances, providing a cheap and effective approach for pathogen detection and microbiome profiling...China University of Macau PhD Position 2015 in Bioinformatics, Computer Science
The Computational Biology and Bioinformatics Group at the University of Macau is inviting applications for PhD Position. Applicants will work on a research project focusing on the flexible receptor protein-ligand docking algorithms for...Ra assembler - a de novo DNA assembler for third generation sequencing data
By biogeek 3090 days agogithub.com - Integration of the Ra assembler - a de novo DNA assembler for third generation sequencing data developed on Faculty of Electrical Engineering and Computing (FER), Ruder Boskovic Institute (RBI) and Genome Institute of Singapore (GIS). Ra is in...JNU Neuroscience/Systems Biology/Mathematical modeling JRF Vacancies
School of Computational and Integrative Sciences Jawaharlal Nehru University New Delhi 110067 Recruitment for Project Applications were invited from the citizens of India for filling up the following temporary position for the CSIR sponsored...Flye: Fast and accurate de novo assembler for single molecule sequencing reads
By Jit 2962 days agogithub.com - Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies. The algorithm uses an A-Bruijn graph to find the overlaps between reads and does not require them to be error-corrected. After...Circlator: automated circularization of genome assemblies using long sequencing reads
By Poonam Mahapatra 2951 days agosanger-pathogens.github.io - A tool to circularize genome assemblies. The algorithm and benchmarks are described in the Genome Biology manuscript. Citation: "Circlator: automated circularization of genome assemblies using long sequencing reads", Hunt et al, Genome Biology...Illumina Smartphone Chip !!!
By Robert M Willioms 4183 days agoIllumina, the company that claims it brought human genome sequencing down to $1000 prices, has now turned its attention to a consumer product - a chip that you can plug into your smartphone and have it read your genetic information.npScarf: real-time scaffolder using SPAdes contigs and Nanopore sequencing reads
By Shruti Paniwala 2924 days agojapsa.readthedocs.io - npScarf (jsa.np.npscarf) is a program that connect contigs from a draft genomes to generate sequences that are closer to finish. These pipelines can run on a single laptop for microbial datasets. In real-time mode, it can be integrated with simple...WALK-IN-INTERVIEW for the post of JRF and Project Assistant @ CIFT
Eligible candidates are invited to attend a walk-in-Interview with all relevant documents for the following positions of Project Fellows (on contractual basis) to work in the Project “ Genetic Diversity of Clostridium botulinum in seafood and...NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
By Jit 2868 days agogithub.com - NextSV, a meta SV caller and a computational pipeline to perform SV calling from low coverage long-read sequencing data. NextSV integrates three aligners and three SV callers and generates two integrated call sets (sensitive/stringent) for different...
