Software and Tools to detect structure variation with long reads !!
...high-mismatch regions, and coverage analysis. Please note the current version of Sniffles requires sorted output from BWA-MEM (use -M and -x parameter) or NGM-LR with the optional S...2636 days ago
2559 days ago
List of universities offering Bachelor or Master bioinformatics degree in Pakistan
...gy(main Campus), Karachi17. Sir Syed University Of Engineering & Technology, Karachi18. Forman Christian College, Lahore19. Qarshi University (lhr), Lahore20. The Superior Unive...2539 days ago
List of genome announcement, notes and reporting journals
...ished as part of a summary article. Link: https://onlinelibrary.wiley.com/journal/17550998 7. Standards in Genomic Science, BioMed Central (Springer), Short genome report, Impact...2037 days ago
List of Research Institutes in India (Biological Sciences/ Biotechnology)
...r, Darjeeling 734 430, West BengalEmail:(Registrar): regnbu@dte.vsnl.net.inWeb: w...Hyderabad 500 007, Andhra PradeshEmail: (Director): lalji@ccmb.res.inWeb: www.cc...Maharashtra Telephone: 020-5601305Email: Registrar): regis@unipune.ernet.inWeb: w...2392 days ago
String graph based genome assembly software and tools !
...onstruction approach called ‘string graph’. Following are the genome assembly tools based on string graph: 1.SGA (String Graph Assembler) https://github.com/jts/s...2357 days ago
Installing Perl environment on Linux
...types of outputs when you execute a command. One is called standard output (or sometimes STDOUT for short), and the other is a standard error (STDERR). 1> is for STDOU...2350 days ago
BBTools for bioinformatician !
...p;BBDuk can operate in one of 4 kmer-matching modes:Right-trimming (ktrim=r), left-trimming (ktrim=l), mas...e with one barcode per line (in exactly the format found in the read header). You do have to include all o...2299 days ago
Installing Bandage on Ubunty !
...en be deleted. ➜ Tools git:(master) ✗ sudo apt-get update[sudo] p...ones used instead.➜ Tools git:(master) ✗ sudo apt-get install build-....23-0ubuntu10) ...➜ Tools git:(master) ✗ git clone https://github.co...stsearchworker.o➜ Bandage git:(master) ✗ ./Bandage2217 days ago
Install ImageMagick from Unix Source
...esence... nochecking for minix/config.h... nochecking whether it is safe to define __EXTENSIONS__... yeschecking for ar... archecking the archiver (ar) interface... archecking for g...2174 days ago