Run bash script in Perl program !
...fferent functions. Despite the fact that Python is commonly favoured over Perl, some bioinformatics software, such as the standalone version of 'alienomics', is written in Perl. Often i...679 days ago
Read a tab delimited file and search with perl
use strict; use warnings; use Data::Dumper; use Text::CSV; use IO::Handle; my $file = "/home/urbe/Tools/Alienomics_v0.1/Alienomics/output/intermediate_files/rRNA/refGene.megablast"; open my $fh, "[0]\n"; warn Dumper $row; # To see the structure }2567 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
...rint "\n Module $_ OK!\n";} } # end 'for' } # end 'BEGIN' block #Bash script else here print "\nDownloading third party database for Alienomics\n"; #Install NCBI taxdump...1202 days ago