A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...om a de novo assembly against a closely related reference. IMAGE, an iterative approach for closing gaps in...ORN, that enables errors in the consensus sequence to be corrected by iteratively mapping reads to the curren...2577 days ago
2518 days ago
Bio++ : C Language libraries for your biological need
...format.Distance methods: (U/W)PGMA, NJ, BioNJ.Maximum likelihood (NNI, including a PhyML-like algorithm).Mixed distance/ML tree reconstruction (iterative approaches).Tree consensus me...3974 days ago
Genome Assembly Tools and Software - PART2 !!
...h adapts to available computing resources by iteratively decomposing the assembly pr...novo Genome AssemblerPRICE (Paired-Read Iterative Contig Extension) is a de nov...quencing Depth IDBA is a practical iterative De Bruijn Graph De Novo Assem...2712 days ago
3973 days ago
Commercial and public next-gen-seq (NGS) software
...Developed at the Sanger Centre by Zemin Ning, Anthony Cox and James Mullikin. C++ for Linux/Alpha. SOCS - Aligns SOLiD data. SOCS is built on an iterative variation of the Rabin-Karp s...3545 days ago
Comment on "Short-read assembly using Spades !"
...by comparing it to reference genomes or sets of conserved genes. Iterative assembly: If the quality of the initial assembly is not satisfactory, SPAdes allows for an iterative assembly approach where the o...442 days ago