Results for "mates reads"
Blogs
The DNA of a Successful Bioinformatician decoded !!!
Many blogs exist about successful bioinformatician, but this blog so far now is my pers...team to achieve its targets, 'cause some of my team mates probably didn't finish! (at l...e us. It's important to treat all the research team mates...3734 days ago
Computer simulation of genetic mechanism !!
Computer simulation is the discipline of designing a mode...m A tool to generate collections of synthetic reads that reflect the diverse taxo.../ pIRS Profile-based Illumina pair-end reads simulator https://code.google...3002 days ago
- Abstract: Genetic testing requires screening of the entire gene, which by convention...e analysis with stringent filtering to eliminate false positive and low quality reads. This simplifies the analysis...
2830 days ago
Structural variation: the hidden genomic treasure
Genome re-sequencing projects have revealed substantial a...neration sequencing data (paired end mapping, split reads, and depth of coverage), arra...BreakSeq, structural variant genotyping using split reads Link CopySeq, genot...2730 days ago
Software and Tools to detect structure variation with long reads !!
Uncovering the connection between genetics and heritable...es designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp...tra-read discordance and soft-clipped tails of long reads to identify structural varian...2635 days ago
String graph based genome assembly software and tools !
In graph theory, a string graph ...phase corrects base calling errors in the reads. The second phase assembles contigs from the corrected reads. The third phase uses paired...l advantages in running FSG on multiple threads. Moreover, we have studied th...2356 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
MinION is the only portable real-time devic...aphMapMapper for long and error-prone readshttps://github.com/isovic/grap.../ marginAlignTools to align nanopore reads to a referencehttps://github....blers for Oxford Nanopore MinION long reads LQSDALIGNER, Celera OLC Nano...2347 days ago
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. Reads longer than this will be brok...GGGAAAAA In this case, all reads starting with "AAAAACCCCCTTTT...ault, "filterbyname" discards reads with names in your name list,...2298 days ago
- Download this https://github.com/trini...-deprecated -m64 -g -O2 -MT pull_reads_with_kmers.o -MD -MP -MF .deps/pull_reads_with_kmers.Tpo -c -o pull_rea...-fopenmp -c ./analysis/ReadsToTranscripts.cc -o obj/analys...has been Installed Properly ReadsToTranscripts: has been I...
2160 days ago
Understating pacbio reads name !
m140415_143853_42175_c100635972550000001823121909121417_s1_p0/553/3100_11230 0.99 24...ole number Subread Region (start_stop using polymerase read coordinates) readScore barcodeScore...2017 days ago
