HiGlass: a tool for exploring genomic contact matrices and tracks.
...scription of the ways that it can be configured to explore and compare contact matrices. To load private data, HiGlass can be run locally within a Docker container. The HiC data in th...2206 days ago
2018 days ago
GRAbB: Selective Assembly of Genomic Regions, a New Niche for Genomic Research
...ted on Ubuntu (12.04 and 14.04), Fedora (23), CentOS (7.1.1503) and Mac OS X (10.7). Furthermore, GRAbB is available as a docker repository: brankovics/grabb (https://hub.docker.com/r/brankovics/grabb/).1977 days ago
SeQuiLa-cov: A fast and scalable library for depth of coverage calculations
The Docker image is available at https://hub.docker.com/r/biodatageeks/. Supplementary information on benchmarking pro...nt • Programming language: Scala • Other requirements: Docker • License: Apache Licen...1654 days ago
HaploTypo: a variant-calling pipeline for phased genomes
...ntation HaploTypo is implemented in Python 2.7 and Python 3.5, and is freely available at https://github.com/gabaldonlab/haplotypo, and as a Docker image.1650 days ago
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1588 days ago
pipesnake: bioinformatics best-practice analysis pipeline for phylogenomic reconstruction
...The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It uses Docker/Singularity containers making...125 days ago