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...fication and the VCF specification. Note that the information on this page is targeted at end-users. For developers, the source code, building instructions and implementation/developmen...2980 days ago
- ...to thousands of bacterial genomes. This readme covers all necessary instructions for the impatient to get andi up and running. For extensive instructions please consult the manual. M...
2966 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instructions: set the read length/configuration and genome si...2218 days ago
- ...DECIPHER, see the Downloads page. To begin using DECIPHER read the "Getting Started DECIPHERing" tutorial. Refer to the PDF documents below for instructions on how to use DECIPHER for va...
2826 days ago
- ...ould begin by downloading the program from here. You will need to choose the link that matches your computing platform and then follow the instructions for opening the download pack...
2799 days ago
E-MEM: Efficient computation of Maximal Exact Matches
E-MEM is a C++/OpenMP program designed to efficiently compute MEMs between large genomes. See the README file for instructions on how to use E-MEM. E-MEM source code The source cod...2750 days ago
- ...machine when aligning mammal-sized genomes; less memory is needed for smaller genomes. Parasol or SGE for cluster support. 750M disk space Instructions IMPORTANT NOTE: Progressive...
2717 days ago
GroopM: Metagenomic binning toolset
...on genomes from multi-sample metagenomic datasets. GroopM is largely parameter-free. Use: groopm -h for more info. For installation and usage instructions see : http://ecogenomics.gith...2668 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
...bsp;UCSC Genome Browser, gene annotation, annotation of repetitive elements, and progress report were previously described in the zPicture instructions and we refer the users t...2533 days ago
Ribbon: Visualizing complex genome alignments and structural variation:
...s, paired-end reads, and assembly/genome alignments. Instructions for each data format are available by clicking on "instructions" in each tab on the right. L...install Ribbon locally from Github by following the instructions here: https://github.com...2401 days ago
