3824 days ago
2902 days ago
2721 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...ntification programs, and usually falls under 5%. GC-Content Indifferent: Prodigal performs well even in high GC genomes, with over a 90% perfect match (5'+3') to the Pseudomon...2712 days ago
2687 days ago
2179 days ago
Many-to-many pairwise alignments of two sequence sets
...x is read that contains values for every possible residue or nucleotide match. Needleall finds the alignmen...ssible score where the score of an alignment is equal to the sum of the matches taken from the scoring matr...2174 days ago
BLAST options, setting and defaults
...equence of fewer than twenty residues, PatMatch is the best choice. Anot...s to use the default default = 2 Nucleic match:reward for a match in the BLA...size:the size of the initial word that must be matched between the database and th...2000 days ago
LTR_Finder: an efficient program for finding full-length LTR retrotranspsons in genome sequences.
LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences. The Program first constructs all exact match pairs by a suffix-array based algori...1966 days ago