Results for "heterozygous"
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...sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively paral...ma A, Hayashi T, Itoh T, “Efficient de novo assembly of highly heterozygous genomes from whole-genome sho...2965 days ago
- ...w in all or most reads before 60nt. A5-miseq assumes it is assembling homozygous haploid genomes. Use a different assembler for metagenomes and heterozygous diploid or polyploid organism...
2868 days ago
- Redundans pipeline assists an assembly of heterozygous genomes.Program takes as input assembled contigs, paired-end and/or mate pairs sequencing libraries and returns...
2854 days ago
- ...ach query to reference is kept) and removing overlapping matches on reference. In preliminary tests, pyScaf performed superbly on simulated heterozygous genomes based on C. para...
2744 days ago
Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
Meraculous is a whole genome assembler for Next Generation Sequencing data geared for large genomes. It is a hybrid k-mer/read-based assembler that capitalizes on the high...2378 days ago
Ranbow: a haplotype assembler for polyploid genomes
...plotype assembler for polyploid genomes. It has been developed for the haplotype assembly of the hexaploid sweet potato genome, which is highly heterozygous. Ranbow can also be applied t...2216 days ago
Purge Haplotigs: Pipeline to help with curating heterozygous diploid genome assemblies
Some parts of a genome may have a very high degree of heterozygosity. This causes contigs for both haplotypes of that part of the genome to be assembled as separate primar...2017 days ago
TRITEX sequence assembly pipeline for Triticeae genomes
...b and pseudomolecules with better gene space representation than a BAC-by-BAC assembly. It has never been tested and is not expected to work on heterozygous or autopolyploid genomes....1771 days ago
HaploTypo: a variant-calling pipeline for phased genomes
...sent HaploTypo, a pipeline tailored to resolve haplotypes in genetic variation analyses. HaploTypo infers the haplotype correspondence for each heterozygous variant called on a phased re...1650 days ago
- ...the assembly of diploid genomes remains a difficult task. A major obstacle is distinguishing between alternative contigs that represent highly heterozygous regions. If primary and secon...
1337 days ago
