Results for "Assembler"
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OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly). It uses information from paired-end/mate-pair/long reads to o...2838 days ago
- Fermi is a de novo assembler with a particular focus on assemb...ion to the role of a typical assembler, fermi also aims to preserve...are often collapsed by other assemblers. Its ultimate goal is to fin...inspired by the string graph assembler (Simpson and Durbin, 2010 and...
2838 days ago
- ...osely related sequences RECORD outperforms more general assisted-assembly software. More at https://sourceforge.net/projects/record-genome-assembler/files/
2761 days ago
- ...he tool will apply: 1. Partitioning a given reads dataset into a given number of partitions. 2. Assembling each partitions using a pre-specified assembler (Velvet or SPAdes in this ver...
2757 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a d...produces results of similar contiguity and accuracy to other de Bruijn assemblers (e.g. Velvet). Download Mi...
2748 days ago
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation...
2748 days ago
CISA: Contig Integrator for Sequence Assembly
A plethora of algorithmic assemblers have been proposed for the de n...genomes, however, no individual assembler guarantees the optimal assemb...imizing various parameters in an assembler is often performed in order t...employ various state-of-the-art assemblers to generate different sets o...2741 days ago
- ...l likely break the synteny. pyScaf works better with contigs than scaffolds, as scaffolds are often affected by mis-assemblies (no de novo assembler / scaffolder is perfect....
2736 days ago
- PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for errors and uncalled bases. The assembler reads two files in FASTQ format with quality information. If...
2702 days ago
YASRA: Reference based assembler
YASRA (Yet Another Short Read Assembler) performs comparative assembly of short reads using a reference genome, which can differ substantially from the genome being sequenced. Mapping...2665 days ago
