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Bpipe - a tool for running and managing bioinformatics pipelines
...big bioinformatics jobs that consist of a series of processing stages - known as 'pipelines'. January 20th, 2016 - New! Bpipe 0.9.9 released! Download latest, all Documentation M...2947 days ago
- Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
2946 days ago
- ...ela, R. Walve, E. Rivals, and E. Ukkonen: Accurate selfcorrection of errors in long reads using de Bruijn graphs. Accepted to RECOMB-Seq 2016. Download: LoRMA 0.3 source files R...
2208 days ago
- ...visualize corresponding multiple sequence alignments and co-variation information.R4RNA is the R package powering R-chie, available for download and local use for more c...
2844 days ago
OPERA : Optimal Paired-End Read Assembler
...tc.), in addition to other scalability and usability improvements (bam and gzip support, smaller memory footprint). We therefore encourage you to download and use our latest version: O...2837 days ago
- ...CIPHER is a software toolset that can be used to maintain, analyze, and decipher large amounts of DNA sequence data. To install DECIPHER, see the Downloads page. To begin using DECIPHE...
2816 days ago
- ...a command subcommand syntax: virmet fetch --viral n, for example, downloads the bacterial database. Other available subcommands so far are fetch download genomes update update v...
2806 days ago
- ...by learning the basics. You should begin by downloading the program from here...then follow the instructions for opening the download package. Once you have done...out best practices for imputation. Download reference data that...
2788 days ago
Maq: Mapping and Assembly with Quality
...s a reference sequence file in the FASTA format. Prepare a reference sequence (ref.fasta). Better a bacterial genome. Download maq, maq-data and maqview at the download page. Copy maq, maq.pl and m...2763 days ago
- SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Download Git repository of SWALO is at https://github.com/atifrahman/SWALO.
2755 days ago
