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Tools to create plots showing N-statistics for genome assemblies More at https://github.com/dentearl/n50PlottingTools3063 days ago
- Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly. More at https://github.com/aaronwolen/liftover https://www.bioconductor.org/help/workflows/liftOver/
3063 days ago
- ...old assembly should be transformed to the new assembly (e.g., as a chain file), transform the coordinates (e.g., with liftOver). https://github.com/wurmlab/flo...
3061 days ago
- ...y with proper parameters. It's also possible to ran it on multiple cores by calling different sub-functions separately. More at https://github.com/mills-lab/svelter/
3042 days ago
- ...de-resolution analysis of structural variants More at http://bioinform.github.io/breakseq2/ Download BreakSeq2 Latest version: https://github.com/bioinform/breakseq2/archi...
3042 days ago
RNA-Seq De novo Assembly Using Trinity
...ll-length transcripts for alternatively spliced isoforms, and teasing apart transcripts that corresponds to paralogous genes. More at https://github.com/trinityrnaseq/trinityrnas...3019 days ago
- Easyfig has moved to github, for newer releases of Easyfig please visit our new webpage - https://mjsull.github.io/Easyfig. Easyfig is...
2982 days ago
- ...is page is targeted at end-users. For developers, the source code, building instructions and implementation/development resources are available on GitHub. The Picard toolkit is open-...
2982 days ago
Awesome bioinformatics pipelines !
A curated list of awesome pipeline toolkits ... https://github.com/pditommaso/awesome-pipeline3011 days ago
PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq3005 days ago
