3026 days ago
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Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as giv...ipulate NGS data as compared to the other command line tools such as grep, sed, per...2902 days ago
2895 days ago
2733 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave) pdfl...type install.packages("ggplot2","proto","xtable")) Perl Optional: BLAT or BLAST...the kmer, cvCut, expCov, and other flags To Run: per...2732 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al., 2004)...2722 days ago