QUAST: quality assessment tool for genome assemblies
QUAST evaluates genome assemblies. For metagenomes, please see MetaQUAST project.It can works both with and without a given reference genome.The tool accepts...2978 days ago
2970 days ago
Trimmomatic: A flexible read trimming tool for Illumina NGS data
...GWINDOW:4:15 MINLEN:36 This will perform the following: Remove adapters (ILLUMINACLIP:TruSeq3-PE.fa:2:30:10) Remove leading low quality or N bases (below quality 3) (LEADING:3) Remove traili...2970 days ago
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HOMER: Software for motif discovery and next-gen sequencing analysis
...Setting up your computing environment Retrieving and storing sequencing files (your own data or from public sources) Checking sequence quality, trimming, general sequence m...2959 days ago
2945 days ago
Hagfish - assess an assembly through creative use of coverage plots
...analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on the concept of coverage plots and aims to assist (amongst others) in quality control of de novo ...2934 days ago
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