Results for "Recursively Search"
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The programs are listed in alphabetical order, Look at the individual applications or go to the GROUPS page to search by category. EMBASSY applications are described in separate documentation for each package. Applications in the current release2882 days ago
- In this exercise, a previously annotated gene will be used to measure the accuracy of dif...GenomeScan, GrailEXP and GENEWISE will be used to annotate the sequence. Both search by signal, content and homolo...
2852 days ago
Entrez Direct: E-utilities on the UNIX Command Line
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconn...ene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line argum...2798 days ago
- BioDownloader is a program for downloading and/or updating files from ftp/http servers. T...ve retrieval of only the required files (file masks, ls-lR parsing, recursive search, updates) has a built-in rep...
2669 days ago
YASRA: Reference based assembler
YASRA (Yet Another Short Read Assembler) performs comparative assembly of short reads usi...edu/~rsharris/lastz/newer) and add the LASTZ binary in your executable/binary search path before installing YASRA.2665 days ago
- DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for protein-protein search as well as DNA-protein search...
2608 days ago
Enrichr: a comprehensive gene set enrichment analysis
Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide...ams. Overall, Enrichr is a comprehensive resource for curated gene sets and a search engine that accumulates biolo...2608 days ago
- A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC or TTGG). Pride&...bsp;et al., 2004). TNA is also fast enough that it can be used as a search engine against a large genome...
2601 days ago
- BioPerl modules Bio::Graphics + Bio::DB:GFF and example scripts. It c...o find a good way of visualization by experimenting with its options. http://search.cpan.org/~lds/Bio-Graphics-2....
2549 days ago
iTOL: Interactive Tree Of Life
Interactive Tree Of Life is an online tool for the display, annotation and managemen...a. iTOL can easily visualize trees with 50'000 or more leaves. With advanced search capabilities and display of u...2526 days ago
