Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
...ram for detecting evolutionarily conserved transcription factor binding sites in multiple alignments. In ad...GALA can be viewed in Mulan, and conserved transcription factor binding sites identified with Mulan/multiTF...2105 days ago
Referee: Genome assembly quality scores
...osition. Referee is a program to calculate a quality score for every position in a genome assembly. This allows for easy filtering of low quality sites for any downstream analysis....2032 days ago
2032 days ago
nQuire: A statistical framework for ploidy estimation using NGS short-read data
...ses next-generation sequencing data to distinguish between diploids, triploids and tetraploids, on the basis of frequency distributions at variant sites where only two bases are segr...1945 days ago
HumCFS: a database of fragile sites in human chromosomes
Fragile sites are specific chromosomal region that exhibit an increased frequency of chromo...xposed to replicative stress. Since from the discovery of chromosomal fragile sites/regions (CFS), several line o...1864 days ago
iRNAD: a computational tool for identifying D modification sites in RNA sequence
iRNAD, for identifying D modification sites in RNA sequence. In this predictor, the RNA samples derived from five species were encoded by nucleotide chemical property and nucleotide density. Support vector machine was utilized to perform the classification. http://lin-group.cn/server/iRNAD/1840 days ago
HS3D: Homo Sapiens Splice Sites Dataset
HS3D (Homo Sapiens Splice Sites Dataset) is a data set of Homo Sapiens Exon, Intron and Splice regions e...verage length, length standard deviation) . 3799+3799 donor and acceptor sites, as windows of 140 nucleotide...1446 days ago
IRscope: an online program to visualize the junction sites of chloroplast genomes
eMPRess, a software program for phylogenetic tree reconciliation under the duplication-transfer-loss model that systematically addresses the problems of choosing event costs and selecting representative solutions, enabling users to make more robust inferences.1280 days ago
DnaSP: DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms
...software). DnaSP can estimate several measures of DNA sequence variation within and between populations in noncoding, synonymous or nonsynonymous sites, or in various sorts of codon...1280 days ago
Fix rewritable error of ELGG !
...write documentation. sudo a2enmod rewrite sudo systemctl restart apache2 sudo nano /etc/apache2/sites-available/000-default.conf Write this /etc/apache2/sites-available/000-default.conf...926 days ago