Results for "Species"
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CNIDARIA: fast, reference-free phylogenomic clustering
...successfully simultaneously clustered 169 genomic and transcriptomic datasets from 4 kingdoms, achieving 100% accuracy at supra-species level and 78% accuracy for species level. Availability and Impl...2917 days ago
- ...) genes in its recipient genome. Detecting HGT between closely related species or strains is challenging, as...eless, there is a great importance in detecting HGT between congeneric species or strains, especially in cli...
2912 days ago
- ...ot a program for aligning sequences to reference genome. We do not recommend using CrossMap to convert genome coordinates between species....
2837 days ago
Method in Comparative genomics !!
...genes and intergenic regions across the four species despite the large number of d...rns of nucleotide conservation across related species. We observed the pressure to...genomics to further our understanding of any species. Our methods are validated by...2771 days ago
- ...t to automate. The task is to design a work flow with a minimal set of tools that would reach state-of-the-art performance across a wide range of species. GeneMark-ET is a gene predic...
1989 days ago
- ...racterized environments that may contain hundreds or even thousands of species. One of the main challenges i...ion of raw sequence reads into groups representing the same or similar species. Such classification is a use...
2802 days ago
- ...nate files from whole genome aligners such as MUMmer. Therefore, Ribbon can be used to test assembly algorithms or inspect the similarity between species. Supplementary Note 4 shows a...
2791 days ago
- ...idual genome studied in the experiment and the reference genome of the species. However, in most typical pro...ery closely related to the reference genome (e.g., mutants of the same species) directly from the reads used...
2756 days ago
CISA: Contig Integrator for Sequence Assembly
...c assemblers have been proposed for the de novo assembly of genomes, however, no individual assembler guarantees the optimal assembly for diverse species. Optimizing various parameter...2736 days ago
- ...e) long reads (NGS-based mode) synteny to the genome of some related species (reference-based mode) Sca...rence-based mode, pyScaf uses synteny to the genome of closely related species in order to order contigs and...
2731 days ago
