Comment on "Extract fasta sequence from a multifasta file with fasta header Ids"
perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file If you have a large number of sequences that you want to extract, then you most likely ha...1967 days ago
2179 days ago
Comment on "Installing Perl environment on Linux"
If Conda is installed ➜ parallelLastz git:(master) ✗ conda create -n myLocalPerl perl perl-app-cpanminusSolving environment: done ## Package Plan ## en...2182 days ago
Comment on "poRe: an R package for the visualization and analysis of nanopore sequencing data"
We now need to install the poRe dependencies in R, which is very easy: R source("http://www.bioconductor.org/biocLite.R") biocLite("rhdf5") install.pack...2231 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
urbe@urbo214b[genome] graphmap align -h []GraphMap - A very accurate and sensitive long-read, high error-rate sequence mapperGraphMap Version: v0.5.2Build date: Jun 6 2...2349 days ago
Comment on "Most Commonly used Awk by Bioinformatician"
Print line of a tab-delimited file when the 8th field is 10090:awk -F "\t" '$8 == 10090 { print $0 }' myFilePrint fields 1, 2, 3 from a tab-delimited file where the 4th field contains a '99':awk -F "\t" '$4 ~ /99/ {print $1"\t"$2"\t"$3}' myFile3766 days ago
Comment on "Online Bioinformatics Courses"
Australian bioinformatics networks n Santa Fe Institute will be launching a series of MOOCs (Massive Open On-line Courses), covering the field of complex systems science. More at http://australianbioinformatics.net/study/#.UhF3D5K2Ouk3969 days ago