Entrez Direct: E-utilities on the UNIX Command Line
...eed for writing custom software to answer ad hoc questions. Queries can move seamlessly between EDirect commands and UNIX utilities or scripts to perform actions that cannot be accomp...2783 days ago
2775 days ago
2718 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can Generate a cell x gene or cell x transcript equivalence class count matrix Perform RNA velocity and single-nuclei RN...1154 days ago
fineSTRUCTURE v2 & GLOBETROTTER
...IXTURE and STRUCTURE-like mixture models. RADpainter, finestructure and ChromoPainter for RAD tag data used for non-model organisms. Scripts to perform many types of conversion. Inc...2666 days ago
2663 days ago
Synteny Portal: a web-based application portal for synteny block analysis
...ve and easy-to-use web-based interface. We believe that Synteny Portal will serve as a highly valuable tool that will enable biologists to easily perform comparative genomics studies...2566 days ago
ONT assembly and Illumina polishing pipeline
This pipeline performs the following steps: Assembly of nanopore reads using Canu. Poli...onto the contigs obtained in the previous steps using BWA mem. Perform correction of contigs using&n...2383 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...incapable of assembling the long read lengths (5-50kbp) at such high error rate (between ~5 and 40% error). With this new method we were able to perform a hybrid error correction of...2377 days ago
Dot, an interactive viewer for genome-genome comparison
Dot, an interactive dot plot viewer that allows genome scientists to visualize genome-genome alignments in order to evaluate new assemblies and perform exploratory comparative genomic...2331 days ago