AVID: A Global Alignment Program
...useful for future studies. The tools we have developed for the alignment comparisons, as well as the AVID program, are publicly available. See Web Site References section for AVID W...2562 days ago
Building Web UIs With Mojolicious Perl
...nd extensions. Libraries for developing Web applications Amon2 Catalyst - Overflowing with features. Very popular. Dancer (Official site) Dancer2 Gantry - Web...2345 days ago
2231 days ago
CGView - Circular Genome Viewer
...litating data sharing. The feature labels in maps can be hyperlinked to external resources, allowing CGView maps to be integrated with existing web site content or databases. For exa...2169 days ago
BioGPS: Spotlight on the Gene Expression Atlas
...ght after the New Year holiday. Throughout the year, new designs for the site were being created, reviewed,...ed, reviewed, adjusted, and more review/adjustments in anticipation of a site redesign for 2017. A Plugin r...2049 days ago
Referee: Genome assembly quality scores
...uality information from the reads that map to a site in an assembled genome to cal...irst calculating genotype likelihoods for every site. For a given site in a diploi.... This allows for easy filtering of low quality sites for any downstream analysis....2032 days ago
SISRS: Site Identification from Short Read Sequences
Next-gen sequence data such as Illumina HiSeq reads. Data must be sorted into folders by taxon (e.g. species or genus). Paired reads in fastq format must be specified by _R1 and _R2 in the (otherwise identical) filenames. Paired and unpaired reads must have a fastq file extension.2008 days ago
NxRepair: error correction in de novo assemblies using Nextera Mate Pair Reads
...ule that automatically detects large structural errors in de novo assemblies using Nextera mate pair reads. The decector will break a contig at the site of an identified misassembly...1951 days ago
HumCFS: a database of fragile sites in human chromosomes
Fragile sites are specific chromosomal region that exhibit an i...s. Since from the discovery of chromosomal fragile sites/regions (CFS), several line...es and they have been recognized as a preferential site for integration of exogenous...1864 days ago
SeQuiLa-cov: A fast and scalable library for depth of coverage calculations
....com/r/biodatageeks/. Supplementary information on benchmarking procedure as well as test data are publicly accessible at the project documentation site http://biodatageeks.org/...1626 days ago