GeneProf: analysis of high-throughput sequencing experiment
...on Sequencing" or NGS): Next-gen analysis for next-gen data! Some of Ge...Section 'System Requirements'). Analysis wizards make your life easy:S...modules:Advanced users and data analysis experts benefit from GeneProf...ext-Gen Data..'). Extensibility:Algorithm developers and computer prog...2536 days ago
2527 days ago
MOSS: A System for Detecting Software Similarity
Moss (for a Measure Of Software Similarity) is an automatic system for determining the si...4, Moss has been very effective in this role. The algorithm behind moss is a significant improvement over other cheating detection algorith...2379 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary b...about organisms. Its emphasis is on phylogenetic analysis, but some of its modules conc...cs, while others do non-phylogenetic multivariate analysis. Because it is modular, the a...2523 days ago
LIBSVM -- A Library for Support Vector Machines
LIBSVM is an integrated software for support vector classification, (C-SVC, nu-SVC), regression (epsilon-SV...rts multi-class classification. Since version 2.8, it implements an SMO-type algorith...2508 days ago
Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
Sequence - Evolution - Function is an introduction to the computational approaches...ential and limitations of computational and experimental approaches to genome analysis.2504 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
We describe a new algorithm, meraculous, for whole genome assembly of deep paired-end short reads, and apply it to the assembly of a dataset of paired 75-bp Illumina rea...2411 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and between genomes is essential for...cts CHSs based on shared gene content alone. It implements fast greedy search algorith...2400 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly...n DNA sequences an important part of analysis pipelines. Here we use Taxobl...sequences. This or similar types of analysis, in combination with manual c...mic data to public repositories. Our analysis pipeline is open-source and f...2395 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB port of a laptop, the MinI...2395 days ago