Results for "Genome Sequence"
Bookmarks
Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome a...2904 days ago
- ...nction WiseScaffolder is a stand-alone semi-automatic application for genome scaffolding of pre-assembled...within scaffolds buildfasta converts the scaffold(s) map(s) into Fasta sequences.
2904 days ago
- ...ata from multiple individuals.Genome STRiP looks both across and within a set of sequenced genomes to detect variation. The met...the method gains power across genomes and processing more genomes pr...ery or genotyping on a single sequenced genome or a small set of gen...
2850 days ago
- ...is a program for convenient conversion of genome coordinates (or annotation fi...F, VCF. CrossMap is designed to liftover genome coordinates between assemblie...uo;s not a program for aligning sequences to reference genome. We do not recommend...
2851 days ago
- Bambus 2.0, the second generation Bambus scaffolder available as an open source package. While most other sca...ed by mate-pairs. Such sources of information include alignment to a reference genome (...
2870 days ago
- OrganellarGenomeDRAW is dedicated to convert genetic information stored in GenBank entries to graphical...for the creation of high-quality, detailed circular maps of organellar genomes like the plastid genome (...
2870 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows to id...f the post-treatment depends on the availability of a reference genome/t...
2870 days ago
- RepeatModeler is a de-novo repeat family identification and modeling package. At the...ethods for identifying repeat element boundaries and family relationships from sequence data. RepeatModeler assists i...
2868 days ago
- ...tly facilitated de novo genome sequencing. However, de...sist in many pieces of contiguous sequence (contigs) arranged in thous...and quality assessment of de novo genome assemblies Citation This so...and quality assessment of de novo genome assemblies. In brief, our scri...
2863 days ago
- A probabilistic framework for structural variant discovery. Ryan M Layer, Colby Chiang, Aaron R Quinlan, and Ira M...ll. 2014. "LUMPY: a Probabilistic Framework for Structural Variant Discovery." Genome B...
2861 days ago
