npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft geno...on a laptop computer for microbial datasets. It also facilitates the real-time analysis of positional information suc...2597 days ago
SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
SIMBA, SImple Manager for Bacterial Assemblies, is a Web interface for managing assembly projects of bacterial g...icians to assemble bacterial genomes sequenced with NextGeneration Sequencing (NGS) pla...2597 days ago
Synteny Portal: a web-based application portal for synteny block analysis
Synteny Portal, a versatile web-based application portal for constructing, visualizing and browsing synteny blocks. With Synteny Portal, users can easily (i) construct s...2596 days ago
BEDOPS v2.4.26: high-performance genomic feature operations
BEDOPS v2.4.26 is a suite of tools to address common questions raised in genomic s.... It aims to be scalable and flexible, facilitating the efficient and accurate analysis and management of large-scale...2577 days ago
Omega2: metagenome assembly pipeline
Omega found overlaps between reads using a prefix/suffix hash table. The overlap g...and trimming short branches. Unitigs were generated based on minimum cost flow analysis of the overlap graph and then...2549 days ago
GeneProf: analysis of high-throughput sequencing experiment
...ChIP-seq; "Next-Generation Sequencing" or NGS): Next-gen analysis for next-gen data! Some of G...(cp. Section 'System Requirements'). Analysis wizards make your life easy:S...Versatile modules:Advanced users and data analysis experts benefit from GeneProf...2554 days ago
2545 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolution...a about organisms. Its emphasis is on phylogenetic analysis, but some of its modules conc...ics, while others do non-phylogenetic multivariate analysis. Because it is modular, the a...2541 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the...ver, with the advent of Next Generation Sequencing (NGS) and the development of new s...ciency, accessibility, and user experience, so that NGS data...2534 days ago
Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
Sequence - Evolution - Function is an introduction to the computational appro...tential and limitations of computational and experimental approaches to genome analysis.2522 days ago