Results for "Protein sequence/structure annotation"
Bookmarks
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
MyPro is an improved genomics software pipeline for prokaryotic genomes. MyPro is user-friend...s minimal programming skills. High-quality prokaryotic genome assembly and annotation can be obtained with ease. It...2726 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs) Description MeGAMerge is a perl based wrapper/tool that can accept...2722 days ago
- LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billio...;of each aligned column. Use sequence quality data properly. Compare DNA to proteins,...
2722 days ago
- Motif based sequence analysis suits The MEME Suite allows the biologist to discover...ovel motifs in collections of unaligned nucleotide or protein sequences,...E Suite supports motif-based analysis of DNA, RNA and protein se...
2718 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbia...90% perfect match (5'+3') to the Pseudomonas aeruginosa curated annotations. Metagenomic Version: Prodi...2712 days ago
- v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome alignment package. Requirements git gcc 4.2 or newer python 2.7 wget 64bit proces...
2693 days ago
- PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for errors and uncalled bases. The assembler reads two files in FASTQ format with quality i...
2687 days ago
- BioDownloader is a program for downloading and/or updating files from ftp/http servers. The program h...g the settings for common bioinformatics file-synchronization needs, including the Protein Da...
2654 days ago
- Our basic strategy in building homology maps is to use exons that a...genome, obtain a set of exon annotations. These annotations can be a combination of both...s not a concern, as incorrect annotations are not likely not have sign...alignments being performed in protein space. Construct a graph with e...
2673 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DN...previously available only for small-scale analyses of proteins o...2673 days ago
