proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
proovread : large-scale high-accuracy PacBio correction through iterative short read con...in terms of accuracy and contiguity/sensitivity (http://dx.doi.org/10.1093/bioinformatics/btu392) is easy to install/r...2348 days ago
Mobyle: a new full web bioinformatics framework
Mobyle, to provide a flexible and usable Web environment for defining and running bioinformatics analyses. It embeds simple ye...s, thus enabling a federated network of curated bioinformatics portals without the user havi...2345 days ago
GenomeTools: The versatile open source genome analysis software
The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm...2314 days ago
An Introduction to Applied Bioinformatics
IAB is primarily being developed by Greg Caporaso(GitHub/Twitter: @gregcaporaso) in the Caporaso Lab at Northern Arizona University. You can find i...2292 days ago
2292 days ago
repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric
Genome scaffolding is a classical challenging problem in bioinformatics. It refers to joining assembly contigs into chains (called scaffolds). The join between two contigs A and B is considered correc...2272 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and envir...r - Uppsala2016 November - Uppsala2017 November - Uppsala Introduction to Bioinformatics Using NGS Data 2015 February...2246 days ago
Scallop: reference-based transcriptome assembler for RNA-seq
Scallop is an accurate reference-based transcript assembler. Scallop features its high a...;Roman Cheplyaka for the interview). It is available at both the bioinformatics chat and iTunes. &...2225 days ago
MIX: Combining multiple assemblies from NGS data
Mix is a tool that combines two or more draft assemblies, without relying on a reference...tig length. The Mix algorithm, approach and results were published in BMC bioinformatics : http://www.biomedcentr...2225 days ago
Jvarkit : Java utilities for Bioinformatics
Collection of Java tool kits for bioinformatics works: Jvarkit : Java utilities for Bioinformatics2193 days ago