Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on the concept of coverage plots and aims to assist (amongst others) in quality control of de novo genome assembly or identification of structural variation in a genome ...Tags: Bioinformatics, Hagfish, Assess, Assembly, Coverage, Plots, NGS, Structure, Variation, SV, Assembly, Genome
2938 days ago
Tags: Bioinformatics, Blobology, Blobplot, TAGC Plot, GC, Assembly, NGS, QC
2915 days ago
Tags: Bioinformatics, GAEMR, Assembly, Stats, Correctness, Accuracy, Software, Tool, NGS
2914 days ago
VAGUE:Velvet Assembler Graphical Front End
VAGUE is a vague acronym for "Velvet Assembler Graphical Front End", which means it is a GUI for the Velvet de novo assembler. The command line version of Velvet can be complicated for beginners to use, but VAGUE makes it clear and simple More at http://www.vicbioinformatics.com/software.va...Tags: Bioinformatics, Analysis, Assembly, Genome, VAGUE, Plot, View, Valvet
2659 days ago
Tags: Scaffolders, Bioinformatics, Assembly, Metagenomics
2851 days ago
Tags: Bioinformatics, Analysis, NGS, Redundans, Assembly, Heterozygous, Genome
2835 days ago
GAGE : Genome Assembly Gold-standard Evaluation
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We have organized this "bake-off" as an attempt to produce a realistic assessment of genome assembly software in a rapidly changing field of next-generation sequencing. The main results of GAGE have now been publishe...Tags: Bioinformatics, Analysis, NGS, Validation, Assembly, Genome
2829 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, PacBio, LongReads, Reads
2659 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, Reference, NGS, RECORD
2750 days ago
Tags: Bioinformatics, Assembly, HGA, NGS
2746 days ago