Results for "vi"
Bookmarks
Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assembler and any NGS read mapper that supports SAM format. Other featu...2905 days ago
- The programs are listed in alphabetical order, Look at the individual applications or go to the GROUPS page to search by category. EMBASSY applications are described in separate documentation for each package. Applications in the current release
2891 days ago
- ...ct shared variation using data from multiple individuals.Genome STRiP looks both...er across genomes and processing more genomes provide better results.To run disco...on does not need to be matched to the target individuals.
2850 days ago
VAGUE:Velvet Assembler Graphical Front End
...assembler. The command line version of Velvet can be complicated for beginners to use, but VAGUE makes it clear and simple More at http://www.vicbioinformatics.com/software.v...2679 days ago
- ...package. While most other scaffolders are closely tied to a specific assembly program, Bambus accepts the output from most current assemblers and provides the user with great flexib...
2871 days ago
- ...., mate-pairs are aligned at the correct distance from each other in the assembly, the depth of coverage is fairly uniform along contigs, etc.). The violations of these invariants a...
2834 days ago
- ...nomes like the plastid genome (plastome) or the mitochondrial genome (chondriome). Nevertheless, you can upload any GenBank entry. The workflow is devided into three steps. M...
2871 days ago
- We advise to run first the TEdenovo pipeline but it is not compulsory. We suppose you begin by running the TEannot pipeline on the example provided in the directory "db/" rather than directly on your own genomic sequences. Thus, from now on, the project name is "DmelChr4".
2869 days ago
- ...his data. The format of these files and their content is discussed in the vignette ‘vcf data.’...ove false positives or otherwise problematic sites. The R package vcfR provides tools to facilitate this f...
2868 days ago
- ...mall numbers of chromosomes. Confirming and improving the quality of such assemblies is critical for subsequent analysis. Visualization and quality assess...In brief, our scripts create Cytoscape files to visualize transcript evidence th...
2863 days ago
