Results for "B"
Bookmarks
Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs More at http://busco.ezlab.org/3070 days ago
- ...ated query genome. It was first developed to transfer annotations between different genome assembly versions. However, it can a...s or Salmonella enterica onto other Salmonella serotypes. RATT is able to transfer any entries pre...
3070 days ago
- Tools to create plots showing N-statistics for genome assemblies More at https://github.com/dentearl/n50PlottingTools
3069 days ago
- Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly. More at https://github.com/aaronwolen/liftover https://www.bioconductor.org/help/workflows/liftOver/
3069 days ago
- ...of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI...ost commonly used file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GT...using CrossMap to convert genome coordinates between species. More at http:...
3069 days ago
- Pilon is a software tool which can be used to: Automatically improve draft assemblies Find variation among strains,...ile of the genome along with one or more BAM files of reads aligned to t...o the input genome, including: Single base differences Small indels...
3069 days ago
- ...Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at t...rged sequences with large gaps. Access Spines here. http://www.broadinstitute.org/science/prog...
3069 days ago
- ...sferring annotations from one genome assembly to another. Usually lift over is done because there is a new, improve...ted or experimentally verified) are available on the old assembly. The i...the coordinates (e.g., with liftOver). https://github.com/wurmla...
3068 days ago
- NCBI Remap. This tool is conceptually similar to liftOver in that in manages conversions between a pair of genome assemblies but it uses different met...appings. It is also available through a simple web interface or you can use the...
3067 days ago
- ...n conformation assay Hi-C has been re-purposed for diverse ap...including de novo genome assembly, deconvolution of metagenom...om high coverage Hi-C data of budding yeast and a human malar...identification for a large number of yeast species, even with...
3066 days ago
