Results for "CA"
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Stand-alone programs for Bioinformatician
This directory contains applications for stand-alone use, built specifically for a Linux 64-bit machine. For help on the bigBed and bigWig applications see:http://genome.ucsc.e...the usage statement for each of the applications....2955 days ago
- ClueGO is a Cytoscape plug-in that visualizes the non-redundant biological terms for large clusters of genes in a functionally grouped network and it can be used in combination with GOlorize.
2944 days ago
- ...db2db select the input type of your data, changing the input type automatically changes the output options...ut types and add your identifiers in the ID list box. Set the remove duplicate values to 'No' if you do no...
2944 days ago
- This histone database can be used to explore the diversity of histone proteins and their sequence variants in many organisms. The resource was established to better understand h...
2943 days ago
- ...to deal with sequencing data from RRBS and its variants, but also target-capture methods such as Agilent SureSelect methyl-seq. In addition, methylKit can deal with base-pair resoluti...
2943 days ago
- ...t, read coverage and taxon annotation for the preliminary assembly, which can be visualised, such as Figure 2a from the paper showing TAGC plots/blobplots for Caenorhabditis sp. 5:
2933 days ago
- ...;Evaluation Metrics and Reporting (GAEMR) package is an assembly analysis framework composed a number of integrated modules. These modules can be executed as a single prog...
2932 days ago
- LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines. Publication: L. Salmela, R. Walve, E. Rivals, and...
2216 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a ta...n and genome size, then select what you want to calculate. Written by Stephen T... Lander-Waterman formula, inspired by a similar calculator written by James Hadf...2216 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requirement for a range of applications. Reference-free methods analyse unprocessed sequenci...ata without relying on prior knowledge, but these do not scale to arbitrarily large genome...2930 days ago
