Results for "DU"
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MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
...rokaryotic genome assembly and annotation can be obtained with ease. It performed better than de novo assemblers and contig integration software. Produces more contiguous assemblies...2750 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
Next Generation Sequencing has totally changed genomics: we are able to produce huge amounts of data at an incredibly low cost compared to Sanger sequencing. Despite this, some old...2746 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al., 2004) packa...2746 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
...perl based wrapper/tool that can accept any number of sequence (FASTA) files containing assembled contigs of any length in Multi-FASTA format to produce an improved contig set base...2745 days ago
- ...table).Runs took ~0.5 min for CANPA on 4 CPUs and ~2 min for ARATH on 16 CPUs. Important remarks: Reduce your assembly before (fasta2homozygous.py) as any redundancy will likely break the s...
2745 days ago
- ...e toolset for generating the synteny correspondences in Plant Genome Duplication Database. It is inte...nome and across different genomes. More at http://chibba.agtec.uga.edu/duplication/mcscan/
2743 days ago
- v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome...us.git cd progressiveCactus git pull git submodule update --init make It i...run the included tools (ex hal2maf) in the submodules/ directory structure, firs...
2717 days ago
- ...supported on 64-bit Linux systems. Binaries and sample data are freely available for download from http://faculty.virginia.edu/irahall/YAHA. Contact: http://genome.wustl.edu/people/groups/detail/hall-lab...
2714 days ago
- ...gene, or the constant regions around zinc finger binding residues), they can be removed from the sequence during assembly. The final seque...ncluding quality, length, uncalled bases, and user-supplied modules. http://neufeldserver.uwa...
2711 days ago
Many-Core Engine (MCE) for Perl example
...stream to the next available worker. CORE MODULES Three modules make up the core engine fo...al queues and priority queues from a single module. MCE::Queue exchanges data...with a touch of MCE::Stream. This model, introduced in 1.506, allows one to pa...2703 days ago
