ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
ETE v3, featuring numerous improvements in the underlying library of methods, and providing a novel set of standalone tools to perform common tasks in comparative genomi...2295 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary biol...about organisms. Its emphasis is on phylogenetic analysis, but some of its modules conc...cs, while others do non-phylogenetic multivariate analysis. Because it is modular, the a...2273 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster...and Soeding J. MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets. Nature...2264 days ago
ALPHA: A Toolkit for Automated Local Phylogenomic Analyses
Automated Local Phylogenomic Analyses, or ALPHA, is a python-based application that provi...has four distinct modes that are useful for different types of phylogenetic analysis: RAxML, File Converter, MS Co...2265 days ago
EWAS: epigenome-wide association study software 2.0
EWAS2.0 can analyze EWAS data and identify the association between epigenetic variations...otype (meplotype) association study; and (3) epigenome-wide association meta-analysis.2265 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and enviro...ists 2016 November - Uppsala2017 Mars - Uppsala Single cell RNA sequencing analysis 2017 October - Uppsala2238 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio an...After the initial assembly, Flye performs an extra repeat classification and analysis step to improve the structura...2221 days ago
Ranbow: a haplotype assembler for polyploid genomes
Ranbow is a haplotype assembler for polyploid genomes. It has been developed for the hapl...aplotypes by gold standard (long) reads ranbow phylo: for the phylogenetic analysis2193 days ago
Gblocks: eliminates poorly aligned positions and divergent regions of a DNA or protein alignment
Gblocks eliminates poorly aligned positions and divergent regions of a DNA or protein alignment so that it becomes more suitable for phylogenetic analysis. This server implements the m...2192 days ago
BEAP: Blast Extension and Assembly Program
The Blast Extension and Assembly Program (BEAP) is a computer...structing a "full length" sequence for functional analysis, or at least to obtain neighb...ment for SNP discovery and linkage disequilibrium analysis. The confidence of assembling...2183 days ago