NovelSeq: Novel Sequence Insertion Detection
The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/203857262574 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http:...very high sensitivity and precision across different error profiles, rates and sequencing technologies even with defaul...2576 days ago
Omega2: metagenome assembly pipeline
Omega found overlaps between reads using a prefix/suffix hash table. The overlap graph of reads was simplified...analysis of the overlap graph and then merged to contigs and scaffolds using mate-pair infor...2543 days ago
GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical software...yse data produced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Generation Sequencing" or NGS): Next-gen analysis f...bsp;fully analyzed next-generation sequencing data. Experimental results ca...2547 days ago
2542 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to...ioinformatics packages. However, with the advent of Next Generation Sequencing (NGS) and the development of new sequencing techniques, the utility of tr...2528 days ago
2527 days ago
Web Apollo: a web-based genomic annotation editing platform
Web Apollo is the first instantaneous, collaborative genomic annot...f the natural consequences following from current advances in sequencing technology is that there are more and more researchers sequencing new genomes. These researcher...2525 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (most often.... However, there is enough information in the reads to correct most of the sequencing errors, thus making subsequen...2421 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go throug...rs, which contains good reads, bad reads and the QC results of each fastq file/pair.Curre...2417 days ago