Comment on "Basic command-line to run BLAST"
...ftp://ftp.ncbi.nlm.nih.gov/genomes/Homo_sapiens/protein/prote...1... connected.Logging in as anonymous ... Logged in!==> SY...ga_protein] wget http://www.genoscope.cns.fr/adineta/data/Adin...ftp://ftp.ncbi.nlm.nih.gov/genomes/Mus_musculus/protein/prote...2306 days ago
Comment on "Bioinformatics tools developed for Oxford Nanopore data analysis !"
NanoComp: comparing multiple runs NanoStat: statistic summary report of reads or alignments NanoFilt: filtering and trimming of reads NanoLyse: removing contaminant reads (e.g. lambda control DNA) from fastq2315 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
urbe@urbo214b[genome] graphmap align -h []GraphM...of the reference sequence. If not specified, index is generate...sam - Standard SAM output (in normal and '-w overlap' modes)....ithm is applied. Options are: normal - Normal alignment of rea...be lowered if the reads are known to be accurate. [80] --mini...2354 days ago
Comment on "List of genome announcement, notes and reporting journals"
The "Genomic Data" journal also publish genome announcement https://www.journals.elsevier.com/genomics-data/2371 days ago
Comment on "BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries"
One more intersting approach by Sonal Singhal @ https://github.com/CGRL-QB3-UCBerkeley/denovoTargetCapturePopGen/blob/master/2-ScrubReads2376 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
...informatics bloggers Diving into Genetics and Genomics YOKOFAKUN Getting Genetics Done Gigabase or gigabyte Genome Spot CoreGenomics T...d Pieces Bits of DNA Bioinformatics Zen MassGenomics Kevin’s GATTACA Wo...2382 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
...eneticsNature MedicineNature BiotechnologyNature Reviews GeneticsNat...nformaticsBriefings in Functional GenomicsBMC BioinformaticsBMC Geno...ncer ResearchPigment Cell & Melanoma ResearchBMC BiologyOncotarg...logy and Medicine Functional Genomics, Genetics, and Bioinforma...2389 days ago
Comment on "MGRA: Breakpoint graphs and ancestral genome reconstructions"
EAGER: efficient ancient genome reconstruction https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0918-z2537 days ago
Comment on "Fellowship Opportunities for Indian Researchers"
Indian scholars can also keep an eye on this http://www.dbtindia.nic.in/out-reach/latest-announcements/ for upcoming annoucement.2572 days ago
Comment on "BLAST+ updated !!!"
...t_value] [-xdrop_gap float_value] [-xdrop_gap_final float_value] [-searchsp int_value] [-sum_stats bool_value] [-penalty penalty] [-reward reward] [-no_greedy] [-min_raw_gapped_scor...2578 days ago