Miropeats: discovers regions of sequence similarity amongst any set of DNA sequences
...ropeats enhances the utility of conventional DNA sequence comparisons when looking at long lengths of sequence similarity by summarizing extensive large scale sequence similarities o...1768 days ago
DeCoSTAR: Reconstructing the Ancestral Organization of Genes or Genomes Using Reconciled Phylogenies
...oSTAR can reconstruct the evolutionary history of domains inside genes, of gene fusion and fission events, or of gene order along chromosomes, for large data sets including dozens of...1639 days ago
1621 days ago
Kevler: Reference-free variant discovery in large eukaryotic genomes
Welcome to kevlar, software for predicting de novo genetic variants without mapping reads to a reference genome! kevlar's k-mer abundance based met...1614 days ago
Π-cyc: A Reference-free SNP Discovery Application using Parallel Graph Search
...1.8.8 with Intel Compiler only Cycles enumeration (aka Bubbles) as part of de novo de bruijn graphs assembly using colours can be unpractical for large error prone genomes which mak...1614 days ago
QuorUM: An Error Corrector for Illumina Reads
...erformer in most metrics we use. QuorUM is efficiently implemented making use of current multi-core computing architectures and it is suitable for large data sets (1 billion bases ch...1606 days ago
MEC: Contig Misassembly Correction
...ct misassemblies in contigs. Firstly, MEC takes fragment coverage as the feature to detect the candidate misassemblies. Then, it can distinguish a large number of false positives fro...1606 days ago
Phytozome v12.1: plant science community hub for accessing palnts genomic data
...ies. More than half of these genomes have been sequenced, assembled and/or annotated with JGI Plant Science program resources. By integrating this large collection of plant genomes i...1565 days ago
1561 days ago
flexidot: Highly customizable, ambiguity-aware dotplots for visual sequence analyses
...ence annotations and sequence similarities to the images. Combined with collage-like outputs, FlexiDot supports simultaneous visual screening of a large sequence sets, allowing dotpl...1527 days ago