LIBSVM -- A Library for Support Vector Machines
...en, and C.-J. Lin. Working set selection using second order information for training SVM. Journal of Machine Learning Research 6, 1889-1918, 2005. You can also find a pseudo c...2528 days ago
orthodotter: Synteny plots (oxford grid)
...-------------------------------------------------------------------------------- orthodotter -f Vigne_Banane.ortho -toPlot Vigne:Banane:black:1=10,5 -x 1200 -y 1200 -bg white -o...2521 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
...rithm, meraculous, for whole genome assembly of deep paired-end short reads, and apply it to the assembly of a dataset of paired 75-bp Illumina reads derived from the 15.4 megabase genome of the hapl...2431 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (most often 100 bp to 150 bp) reads at a low cost. Even with low (advertised 1%) error rate, 100...2430 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
...s, which contains good reads, bad reads and the QC results of each fastq file/pair.Currently it supports processing data from HiSeq 2000/2500/3000/4000, Nextseq 500/550, MiniSeq...and other&nb...2425 days ago
2424 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
...rsquo;re not interested in the quality assement of the raw or event level data, and want to jump straight to the getting FASTQ format files from fast5 files you can go straight to...2415 days ago
SIMA C++ Implementation: Simultaneous Multiple Alignment of LC/MS Peak Lists
This is the c++ implementation for SIMA - Simultaneous Multiple Alignment of LC/MS Peak Lists. The package contains C++ source code as well as two binary files. The...2415 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...Bio data sets are PacBio E. coli sample, ERS473430, ERS544009, ERS554120, ERS605484, ER...f errors) We start with an all against all comparison: minimap -Sw5 -L100 -m0 -t8 reads.fq reads....2411 days ago
Opera: An optimal genome scaffolding program
...efficient and exact scaffolding of large, repeat-rich eukaryotic genomes with performance guarantees. Genome Biology, May 2016, doi: 10.1186/s13059-016-0951-y.Song Gao, Wing-Kin Sung, N...2411 days ago