1989 days ago
Osprey: Network Visualization System
...oftware platform for the visualization of complex biological interaction networks. Osprey builds data-rich graphical representations from Gene Ontology (GO) annotated interacti...1984 days ago
1983 days ago
MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
MACSE aligns coding NT sequences with respect to their AA translation while allowing NT sequences t...SE is hence the first automatic solution to align protein-coding gene datasets containing non-functional sequences (pseudogenes) w...1955 days ago
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates
multiple-genome Phage Annotation Toolkit and Evaluator (multiPhATE). multiPhATE is a throughput pip...phage genomes. This tool incorporates a de novo phage gene-calling algorithm and assigns putative functions to gene cal...1868 days ago
Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
...plug-in for the JBrowse Genome Viewer. In addition to genes and pseudogenes, users can annotate ncRNAs (...ompt users with a publication title to confirm their submission. Gene Ontology (GO) terms are supported and...1853 days ago
FUMA GWAS: Functional Mapping and Annotation of Genome-Wide Association Studies
FUMA is a platform that can be used to annotate, prioritize, visualize and interpret GWAS results. The SNP2GENE function takes GWAS summ...enomic areas identified by lead SNPs. The GENE2FUN...1852 days ago
1835 days ago
TRITEX sequence assembly pipeline for Triticeae genomes
The pipeline is open-source and hosted in a public Bitbucket repository. T...nge of dozens of Mb and pseudomolecules with better gene space representation than a B...ygous or autopolyploid genomes. A protocol for generati...1772 days ago
ALF--a simulation framework for genome evolution.
Artificial Life Framework (ALF) simulates a root genome into a number of related genomes. Result files include the resulting gene seq...1709 days ago