1979 days ago
Osprey: Network Visualization System
Osprey is a software platform for the visualization of complex biological interaction networks. Osprey builds data-rich graphical representations from Gene Ontolo...1974 days ago
1973 days ago
MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
MACSE aligns coding NT sequences with respect to their AA translation while allowing NT sequences...E is hence the first automatic solution to align protein-coding gene datasets containing non-functional sequences (pseudogenes) with...1945 days ago
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates
multiple-genome Phage Annotation Toolkit and Evaluator (multiPhATE). multiPhATE is a throughput pi...phage genomes. This tool incorporates a de novo phage gene-calling algorithm and assigns putative functions to gene calls...1858 days ago
Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
Apollo is a plug-in for the JBrowse Genome Viewer. In addition to genes and pseudogenes, users can annotate ncRNAs (snRNA, snoRNA, tRNA, rRNA), miRN...users with a publication title to confirm their submission. Gene Ontolo...1843 days ago
FUMA GWAS: Functional Mapping and Annotation of Genome-Wide Association Studies
FUMA is a platform that can be used to annotate, prioritize, visualize and interpret GWAS results. The SNP2GENE function takes GWAS summ...nomic areas identified by lead SNPs. The GENE2FUNC&n...1842 days ago
1825 days ago
jackalope: A swift, versatile phylogenomic and high-throughput sequencing simulator
jackalope simply and efficiently simulates (i) variants from reference genomes and...imulate new ones. Genomic variants can be simulated using summary statistics, phylogenies, Variant Call Format (VCF) fi...1787 days ago
TRITEX sequence assembly pipeline for Triticeae genomes
The pipeline is open-source and hosted in a public Bitbucket repository....ge of dozens of Mb and pseudomolecules with better gene space representation than a B...gous or autopolyploid genomes. A protocol for generating...1762 days ago