ITIS: the Integrated Taxonomic Information System!
ITIS, the Integrated Taxonomic Information System! Here you will find authoritative taxonomic information on plants, animals, fungi, and microbes of North Am...p;Species 2000 and the Global Biodiversity Information Facility (GBIF). The ITIS and...1753 days ago
Minipolish: A tool for Racon polishing of miniasm assemblies
...hile keeping the assembly in graph form. It also takes care of some of the other nuances of polishing a miniasm assembly: Adding read depth information to contigs Fixing sequence t...1659 days ago
phyloXML: XML for evolutionary biology and comparative genomics
...gned to describe phylogenetic trees (or networks) and associated data. PhyloXML provides elements for commonly used features, such as taxonomic information, gene names and identifiers,...1654 days ago
SeQuiLa-cov: A fast and scalable library for depth of coverage calculations
The Docker image is available at https://hub.docker.com/r/biodatageeks/. Supplementary information on benchmarking procedure as well as test data are publicly accessible at the pro...1647 days ago
RePS: Repeat-masked Phrap with scaffolding, a WGS sequence assembler
...s them prior to the assembly. The established software Phrap is used to compute meaningful error probabilities for each base. Clone-end-pairing information is used to construct scaffold...1627 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
...ts the memory usage (default: 100000000) -stdout: output the corrected reads to stdout (default: not used) -verbose: output some correction information to stdout (default: not used)...1595 days ago
PANEV: an R package for a pathway-based network visualization
PANEV (PAthway NEtwork Visualizer) is an R package set for gene/pathway-based network visualization. Based on information available on KEGG, it visualizes genes within a network of mult...1591 days ago
Sequanix: a dynamic graphical interface for Snakemake workflows
...ines including HTML reports. Standalone applications: sequana_coverage ease the extraction of genomic regions of interest and genome coverage information sequana_taxonomy performs a...1588 days ago
SLR-superscaffolder: A scaffold assemble pipeline for stLFR reads.
This is a scaffold assembler designed for stLFR reads[1]. It uses the link-reads information from stLFR reads to assemble contigs to scaffolds. Here is an illustration of this pipeline:1586 days ago
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