Results for "PE"
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Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (often unintentionally) mixed-species pools. It allows the simultaneous d...2935 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requirement for a range of applications. Ref...ranscriptomic datasets from 4 kingdoms, achieving 100% accuracy at supra-species level and 78% accuracy fo...2933 days ago
- ...alization platform for ‘omics data. Please find the methods paper here: https://peerj.com/articles/1319/ Anvi&r...s development. Here is the acknowledgements section of our methods paper An analysis and visualizati...
2933 days ago
- ...ctions of horizontally transferred proteins, but can also serve as an independent quality control test for...ntial horizontal transfer candidates identified by alternative methods, especially those based on nucleic...
2927 days ago
- ...ed) genes in its recipient genome. Detecting HGT between closely related species or strains is challenging...theless, there is a great importance in detecting HGT between congeneric species or strains, especially in...
2927 days ago
Linux command line exercises for NGS data processing
...used tools for NGS analysis as well as giving experience in writing one-liners....the other command line tools such as grep, sed, perl etc. Furthermore, having a...ommands from the keyboard and gives them to the operating system. Most Linux syst...2927 days ago
- ...nbsp; Updated to use samtools 1.1 and bcftools 1.2. Updated usage for bcftools.AboutSAMtools is a popular open-source tool used in next-gen...
2926 days ago
- .... It does not generate INDEL sequencing errors, but this can be partly compensated by simulating INDEL pol...nd sequencing errors in read names. One can evaluate the accuracy of a mapper or a SNP caller with wgsim_e...
2926 days ago
- ...biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages th...s from biology and bioinformatics community, to get benefited by performing down-stream analysis...
2920 days ago
- ...tility makes it easy to identify what are the properties of a read based on its S...lag value would be for a given combination of properties. To decode a given SAM...er the number in the field below. The encoded properties will be listed under Sum...
2920 days ago
