CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-m...use and report issues encountered. Canu is a hierachical assembly pipeline which...aps in high-noise sequences using MHAP Generate corrected sequence consensu...2957 days ago
MEDEA: Comparative Genomic Visualization with Adobe Flash
As the number of sequence and annotated genomes grows larger, the need to understand, compare, and contrast the data becomes increasingly important. Using the power of the human vis...2974 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
...ee method/tool to find and visualise genomic rearrangements. The detection is bas...mash outputs a SVG image, with an ideogramoutput architecture, where th...e large-scale [chromosomal by chromosome] of several primates was equal/different...2974 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technolo...functions. Recently, in order to make RAST a more useful research tool...s in bioinformatics, it has become desirable to build a version of RAST...custom features to an annotation job. RASTtk also accommodates the bat...2973 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets o...2972 days ago
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YASS :: genomic similarity search tool
...end them to local alignments. This genomic search tool uses multiple transition constrained spaced seeds that enable...ade-off transition-constrained spaced seeds to improve sensitivity (transition mutations are purine t...2968 days ago
Painless package development for R
...started be sure to check out: devtools Google Group – https://groups.google.com/forum/#!forum/rdevtools book on “Advanced R programming” – http...2967 days ago
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