SuRankCo: supervised ranking of contigs in de novo assemblies
SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignmen...2587 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
Grinder is a versatile program to create random shotgun an...teomic shotgun and amplicon datasets from current sequencing technologies such as Sanger,...s under specific hypothesis, e.g. with or without sequencing errors, or with low or high c...2587 days ago
Genome Annotation Transfer Utility (GATU)
Genome Annotation Transfer Utility (GATU) was designed to facilitate quick, efficient annotat...d strain). The goal is to annotate the majority of the new genome’s genes in a single ste...2582 days ago
NovelSeq: Novel Sequence Insertion Detection
The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/203857262571 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://w...ery high sensitivity and precision across different error profiles, rates and sequencing technologies even with defaul...2573 days ago
eQuant : energy-based quality assessment of protein
Protein structures are of varying quality. Especially, in-silico modeled structure...eQuant is a service for structure quality assessment of single p...the reliability of individual residues. You can submit single PDB...2556 days ago
2555 days ago
GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical software suit...yse data produced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Generation Sequencing" or NGS): Next-gen analysis f...bsp;fully analyzed next-generation sequencing data. Experimental results ca...2545 days ago
slacTree: SVG Large Annotated Circular Tree drawing
A simple, extensible, Perl script for producing figures of large phylogenetic trees. While...of circular trees with more than 1000 taxa with custom annotations Because it is a single Per...2547 days ago
2540 days ago