RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
Alonge M, Soyk S, Ramakrishnan S, Wang X, Goodwin S, Sedlazeck FJ, Lippman ZB, Schatz MC:&nb...ng genome assembly contigs into pseudochromosomes via minimap2 alignments to a closely related...1872 days ago
HumCFS: a database of fragile sites in human chromosomes
Fragile sites are specific chromosomal region that exhibit an increased frequency of ch...eral line of evidence suggests their involvement in human pathologies and they have bee...arrangement. There is large gap in our knowledge of human C...1868 days ago
Patterns: a modeling tool dedicated to biological network modeling
It is designed to work with patterned data. Famous examples of problems related to patterned data are: recovering signals in networks after a stimulation (cascade network reverse engineering), analysing periodic signals.1773 days ago
ALF--a simulation framework for genome evolution.
Artificial Life Framework (ALF) simulates a root genome into a number of related genomes. Resu...1684 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
Alonge M, Soyk S, Ramakrishnan S, Wang X, Goodwin S, Sedlazeck FJ, Lippman ZB, Schatz MC:&nb...ng genome assembly contigs into pseudochromosomes via minimap2 alignments to a closely related...1680 days ago
simuG: a general-purpose genome simulator
Simulated genomes with pre-defined and random genomic variants can be very useful for benchmarking genomic and bio...y number variants, inversions and translocations) for any organisms (including human)....1647 days ago
WOS-C Women Scientist Scheme KIRAN-IPR
Women Scientist Scheme WOS-C is one among the most coveted programs that Women Scientists in...r. It is an initiative started by the Government of India, Department of Science & Technol...1618 days ago
Genome in a Bottle (GIAB) Consortium
The Genome in a Bottle (GIAB) Consortium is a public-private-acad...ethods, and reference data) to enable translation of whole human g...me sequencing to clinical practice. https://www.nist.gov/news-events/news/20...1589 days ago
FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
FastGT is a program package for whole-genome genotyping of genome variants directly from raw sequencing reads. It...n Linux. FastGT uses a list of variant-specific k-mer pairs that are unique in human g...1586 days ago
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