GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene structure predictions. The gene...tivated by disabling limitations in GeneSeqer, a popular gene prediction program which is widely used for plan...2096 days ago
2087 days ago
VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity
VGSC, the Vector Graph toolkit of genome Synteny and Collinearity, and its online service, to visualize the synteny and collinearity in the common graphical format, including both raster (JPEG, Bitmap, and PNG) and vector graphic (SVG, EPS, and PDF).2069 days ago
Referee: Genome assembly quality scores
Modern genome sequencing technologies provide a succint measure of quality at each pos...10 genotypes given the called reference base at each position. Referee is a program to calculate a quality score...2064 days ago
pyGenomeTracks: Standalone program and library to plot beautiful genome browser tracks
pyGenomeTracks aims to produce high-quality genome browser tracks that are highly customizable. Currently, it is possible to plot: bigwig bed (many options) bedgraph links (represented as arcs) Hi-C matrices (if HiCExplorer is installed)2059 days ago
AMStat: display statistics of large sequence files from next generation sequencing projects
SAMStat is an efficient C program to quickly display statistics of large sequence files from next generation sequencing projects. When applied to SAM/BAM files all statist...2059 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
ANItools is a software package written by PERL scripts that can be run in a Linux/Unix...late their average nucleotide identity (ANI), you could download and run this program directly. Or you could send u...2054 days ago
RepeatMasker compatible blast tool
RMBlast is a RepeatMasker compatible version of the standard NCBI blastn program. The primary difference betwe...istribution is the addition of a new program "rmblastn" for use with Repea...ry features to the stock NCBI blastn program. These include: Support fo...2031 days ago
2028 days ago
FGENESH - Program for predicting multiple genes in genomic DNA sequences
FGENESH is the fastest (50-100 times faster than GenScan) and most accurate gene finde...genome sequencing projects, it was cited "the most successful (gene finding) program (Yu et al. (2002) Scienc...2018 days ago