Results for "Arabidopsis data"
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GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously ris...researchers gain new insights into the underlying data. Such visualizations typicall...ion of additional information such as experimental data or annotations. However, prov...2722 days ago
- YAHA, a fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW at f...ity: YAHA is currently supported on 64-bit Linux systems. Binaries and sample data are freely available for down...
2721 days ago
- BioDownloader is a program for downloading and/or...designed to deal with bioinformatics data files and servers: optimized to work with vast amount of data and very large file sets (~ 1...nization needs, including the Protein Data Bank (PDB) and National Cente...
2684 days ago
Many-Core Engine (MCE) for Perl example
MCE spawns a pool of workers and therefor...w process per each element of data. Instead, MCE follows a bank...l. Imagine the line being the data and bank-tellers the parallel...module. MCE::Queue exchanges data via the core engine to enable...in 1.506, allows one to pass data from one sub-task into the ne...2710 days ago
iTOL: interactive Tree Of Life
Interactive Tree Of Life is an online tool for the display and manipulation of p...to the precomputed trees, users can upload and display personal trees and data, using the 'Data upload' page or through a per...2710 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a numbe...ve DNA polymorphism analyses on large datasets. Among other features, th...s allow for: (i) analyses on multiple data files; (ii) haplotype phasing...2704 days ago
fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE version 2,...inter, finestructure and ChromoPainter for RAD tag data used for non-model organisms....mportant haplotype information from dense genotype data. It describes ancestry in an...2696 days ago
- maftools - An R package to summarize, analyze and visualize MA...of each cancer type being over 200. The resulting data consisting of genetic variant...CGA sources or any in-house studies as long as the data is in MAF format. Maftools ca...
2693 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix) application t...genomes, with a focus on handling genome assembly data. The application is available...s, draft genomes or even raw, unassembled sequence data. BRIG also accepts SAM-forma...
2693 days ago
- This sockeye software uses the Ensembl database project to import sequence and annotatio...ort their own custom sequence and annotation data. Individual annotation object...By using the Java3D API to visualize genomic data in a 3D environment, we are a...
2692 days ago
